species:   Rhsol
pid:       PID0571
parent:    Rhi-milR-52
paralog:   
locus:     KB317739.1:66004-66086
matures:   ['CGAUGAGCAUAGACUGGUAGAGCG', 'UCGCUGGAGCUGUCUCUCUG']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317739.1:66004-66086

0 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

         ***********************              ***************************          
CGUUGCUGGCCUCGCUGGAGCUGUCUCUCUGUAGACGAACUCAUCUACUCGAUGAGCAUAGACUGGUAGAGCGUUAUAGAAUA
......((((((((((((..(((((((((.(((((.(....).)))))..)).))).)))).))))).))).)))).......
-------------------------------------------------CGAUGAGCAUAGACUGGUAGAGCG---------- l=24 a=0 c
-----------UCGCUGGAGCUGUCUCUCUG---------------------------------------------------- l=20 a=0 c*
------------------------------------------------UCGAUGAGCAUAGACUGGUAGAGCG---------- l=25 a=2 ma
-----------UCGCUGGAGCUGUCUCUCUGU--------------------------------------------------- l=21 a=0 ma*

------------------------------------------------UCGAUGAGCAUAGACUGGUAGA------------- l=22 a=1 
------------------------------------------------UCGAUGAGCAUAGACUGGUAGAGCG---------- l=25 a=2 (ma)
-------GGCCUCGCUGGAGCUGUCUCUCUGUAGACG---------------------------------------------- l=30 a=1 

mb-01011
ax-1011001
ku-01
ss-101011111000
fn-011
